Attributes of class 'PhysicalEntity'

Attribute name Cardinality Value type Allowed classes Attribute origin Value defines instance Db column type
DB_ID 1 INTERNAL_ID N/A DatabaseObject   INTEGER(10) UNSIGNED
__is_ghost 1 OTHER N/A DatabaseObject   ENUM('TRUE')
_displayName 1 TEXT N/A DatabaseObject   TEXT
_timestamp 1 OTHER N/A DatabaseObject   TIMESTAMP
authored 1 INSTANCE InstanceEdit PhysicalEntity   INTEGER(10) UNSIGNED
compartment + INSTANCE EntityCompartment PhysicalEntity   INTEGER(10) UNSIGNED
created 1 INSTANCE InstanceEdit DatabaseObject   INTEGER(10) UNSIGNED
crossReference + INSTANCE DatabaseIdentifier PhysicalEntity   INTEGER(10) UNSIGNED
definition 1 TEXT N/A PhysicalEntity   TEXT
edited + INSTANCE InstanceEdit PhysicalEntity   INTEGER(10) UNSIGNED
figure + INSTANCE Figure PhysicalEntity   INTEGER(10) UNSIGNED
goCellularComponent 1 INSTANCE GO_CellularComponent PhysicalEntity   INTEGER(10) UNSIGNED
hasDomain + INSTANCE PhysicalEntity   INTEGER(10) UNSIGNED
inferredFrom + INSTANCE PhysicalEntity PhysicalEntity   INTEGER(10) UNSIGNED
inferredTo + INSTANCE PhysicalEntity PhysicalEntity   INTEGER(10) UNSIGNED
literatureReference + INSTANCE LiteratureReference PhysicalEntity   INTEGER(10) UNSIGNED
modified + INSTANCE InstanceEdit DatabaseObject   INTEGER(10) UNSIGNED
name + TEXT N/A PhysicalEntity   TEXT
reviewed + INSTANCE InstanceEdit PhysicalEntity   INTEGER(10) UNSIGNED
revised + INSTANCE InstanceEdit PhysicalEntity   INTEGER(10) UNSIGNED
shortName 1 TEXT N/A PhysicalEntity   TEXT
stableIdentifier 1 INSTANCE StableIdentifier DatabaseObject   INTEGER(10) UNSIGNED
summation + INSTANCE Summation PhysicalEntity   INTEGER(10) UNSIGNED

Referers of class 'PhysicalEntity' instances

Class name Attribute name Cardinality
CatalystActivity physicalEntity 1
Polymer repeatedUnit +
Reaction output +
Depolymerisation output +
BlackBoxEvent output +
ReactionlikeEvent output +
Polymerisation output +
Depolymerisation requiredInputComponent +
Reaction requiredInputComponent +
Polymerisation requiredInputComponent +
ReactionlikeEvent requiredInputComponent +
BlackBoxEvent requiredInputComponent +
CatalystActivity activeUnit +
Complex hasComponent +
ComplexDomain hasComponent +
Complex inferredFrom +
Polymer inferredFrom +
PhysicalEntity inferredFrom +
CandidateSet inferredFrom +
OtherEntity inferredFrom +
EntitySet inferredFrom +
GenomeEncodedEntity inferredFrom +
DefinedSet inferredFrom +
OpenSet inferredFrom +
EntityWithAccessionedSequence inferredFrom +
SimpleEntity inferredFrom +
Requirement regulator 1
PositiveRegulation regulator 1
Regulation regulator 1
NegativeRegulation regulator 1
ConcurrentEventSet focusEntity +
CandidateSet hasCandidate +
EntityVertex representedInstance 1
DefinedSet hasMember +
OpenSet hasMember +
CandidateSet hasMember +
EntitySet hasMember +
_Deleted replacementInstances +
Reaction input +
Depolymerisation input +
Polymerisation input +
BlackBoxEvent input +
ReactionlikeEvent input +
Polymer inferredTo +
Complex inferredTo +
CandidateSet inferredTo +
EntitySet inferredTo +
OtherEntity inferredTo +
PhysicalEntity inferredTo +
EntityWithAccessionedSequence inferredTo +
DefinedSet inferredTo +
GenomeEncodedEntity inferredTo +
OpenSet inferredTo +
SimpleEntity inferredTo +
Reaction entityOnOtherCell +
Depolymerisation entityOnOtherCell +
BlackBoxEvent entityOnOtherCell +
ReactionlikeEvent entityOnOtherCell +
Complex entityOnOtherCell +
Polymerisation entityOnOtherCell +
VertexSearchableTerm termProvider +

Sidebar on the left shows the hierarchy of FlyReactome classes. The number of instances of this class is shown in square brackets and is hyperlinked to a page listing all instances in this class.

The main panel shows attributes of the selected class. Own attributes, i.e. the ones which are not inherited from a parent class are indicated in colour.

'+' in 'Cardinality' column indicates that this is a multi-value attribute.

'Value defines instance' column indicates the attributes the values of which determine instance identity and are used to check if an identical instance has been stored in the database already. 'ALL' indicates that that all of the values of a given attribute must be identical while 'ANY' shows that identity of any single value of a given attribute is enough. Of course, if the identity is defined by multiple attributes each of them has to match.