Attributes of class 'PhysicalEntity'

Attribute name Cardinality Value type Allowed classes Attribute origin Value defines instance Db column type
DB_ID 1 INTERNAL_ID N/A DatabaseObject   INTEGER(10) UNSIGNED
__is_ghost 1 OTHER N/A DatabaseObject   ENUM('TRUE')
_displayName 1 TEXT N/A DatabaseObject   TEXT
_timestamp 1 OTHER N/A DatabaseObject   TIMESTAMP
authored 1 INSTANCE InstanceEdit PhysicalEntity   INTEGER(10) UNSIGNED
compartment + INSTANCE EntityCompartment PhysicalEntity   INTEGER(10) UNSIGNED
created 1 INSTANCE InstanceEdit DatabaseObject   INTEGER(10) UNSIGNED
crossReference + INSTANCE DatabaseIdentifier PhysicalEntity   INTEGER(10) UNSIGNED
definition 1 TEXT N/A PhysicalEntity   TEXT
edited + INSTANCE InstanceEdit PhysicalEntity   INTEGER(10) UNSIGNED
figure + INSTANCE Figure PhysicalEntity   INTEGER(10) UNSIGNED
goCellularComponent 1 INSTANCE GO_CellularComponent PhysicalEntity   INTEGER(10) UNSIGNED
hasDomain + INSTANCE PhysicalEntity   INTEGER(10) UNSIGNED
inferredFrom + INSTANCE PhysicalEntity PhysicalEntity   INTEGER(10) UNSIGNED
inferredTo + INSTANCE PhysicalEntity PhysicalEntity   INTEGER(10) UNSIGNED
literatureReference + INSTANCE LiteratureReference PhysicalEntity   INTEGER(10) UNSIGNED
modified + INSTANCE InstanceEdit DatabaseObject   INTEGER(10) UNSIGNED
name + TEXT N/A PhysicalEntity   TEXT
reviewed + INSTANCE InstanceEdit PhysicalEntity   INTEGER(10) UNSIGNED
revised + INSTANCE InstanceEdit PhysicalEntity   INTEGER(10) UNSIGNED
shortName 1 TEXT N/A PhysicalEntity   TEXT
stableIdentifier 1 INSTANCE StableIdentifier DatabaseObject   INTEGER(10) UNSIGNED
summation + INSTANCE Summation PhysicalEntity   INTEGER(10) UNSIGNED

Referers of class 'PhysicalEntity' instances

Class name Attribute name Cardinality
Polymerisation output +
Reaction output +
ReactionlikeEvent output +
BlackBoxEvent output +
Depolymerisation output +
OtherEntity inferredTo +
DefinedSet inferredTo +
Polymer inferredTo +
PhysicalEntity inferredTo +
GenomeEncodedEntity inferredTo +
SimpleEntity inferredTo +
Complex inferredTo +
CandidateSet inferredTo +
OpenSet inferredTo +
EntityWithAccessionedSequence inferredTo +
EntitySet inferredTo +
PositiveRegulation regulator 1
Regulation regulator 1
Requirement regulator 1
NegativeRegulation regulator 1
_Deleted replacementInstances +
VertexSearchableTerm termProvider +
CandidateSet hasCandidate +
Reaction input +
ReactionlikeEvent input +
Polymerisation input +
Depolymerisation input +
BlackBoxEvent input +
Polymerisation requiredInputComponent +
Reaction requiredInputComponent +
ReactionlikeEvent requiredInputComponent +
BlackBoxEvent requiredInputComponent +
Depolymerisation requiredInputComponent +
DefinedSet inferredFrom +
OtherEntity inferredFrom +
Polymer inferredFrom +
PhysicalEntity inferredFrom +
GenomeEncodedEntity inferredFrom +
Complex inferredFrom +
SimpleEntity inferredFrom +
CandidateSet inferredFrom +
EntityWithAccessionedSequence inferredFrom +
OpenSet inferredFrom +
EntitySet inferredFrom +
ConcurrentEventSet focusEntity +
OpenSet hasMember +
EntitySet hasMember +
DefinedSet hasMember +
CandidateSet hasMember +
Complex entityOnOtherCell +
ReactionlikeEvent entityOnOtherCell +
Reaction entityOnOtherCell +
Polymerisation entityOnOtherCell +
Depolymerisation entityOnOtherCell +
BlackBoxEvent entityOnOtherCell +
CatalystActivity physicalEntity 1
Polymer repeatedUnit +
CatalystActivity activeUnit +
EntityVertex representedInstance 1
ComplexDomain hasComponent +
Complex hasComponent +

Sidebar on the left shows the hierarchy of FlyReactome classes. The number of instances of this class is shown in square brackets and is hyperlinked to a page listing all instances in this class.

The main panel shows attributes of the selected class. Own attributes, i.e. the ones which are not inherited from a parent class are indicated in colour.

'+' in 'Cardinality' column indicates that this is a multi-value attribute.

'Value defines instance' column indicates the attributes the values of which determine instance identity and are used to check if an identical instance has been stored in the database already. 'ALL' indicates that that all of the values of a given attribute must be identical while 'ANY' shows that identity of any single value of a given attribute is enough. Of course, if the identity is defined by multiple attributes each of them has to match.