Attributes of class 'PhysicalEntity'

Attribute name Cardinality Value type Allowed classes Attribute origin Value defines instance Db column type
DB_ID 1 INTERNAL_ID N/A DatabaseObject   INTEGER(10) UNSIGNED
__is_ghost 1 OTHER N/A DatabaseObject   ENUM('TRUE')
_displayName 1 TEXT N/A DatabaseObject   TEXT
_timestamp 1 OTHER N/A DatabaseObject   TIMESTAMP
authored 1 INSTANCE InstanceEdit PhysicalEntity   INTEGER(10) UNSIGNED
compartment + INSTANCE EntityCompartment PhysicalEntity   INTEGER(10) UNSIGNED
created 1 INSTANCE InstanceEdit DatabaseObject   INTEGER(10) UNSIGNED
crossReference + INSTANCE DatabaseIdentifier PhysicalEntity   INTEGER(10) UNSIGNED
definition 1 TEXT N/A PhysicalEntity   TEXT
edited + INSTANCE InstanceEdit PhysicalEntity   INTEGER(10) UNSIGNED
figure + INSTANCE Figure PhysicalEntity   INTEGER(10) UNSIGNED
goCellularComponent 1 INSTANCE GO_CellularComponent PhysicalEntity   INTEGER(10) UNSIGNED
hasDomain + INSTANCE PhysicalEntity   INTEGER(10) UNSIGNED
inferredFrom + INSTANCE PhysicalEntity PhysicalEntity   INTEGER(10) UNSIGNED
inferredTo + INSTANCE PhysicalEntity PhysicalEntity   INTEGER(10) UNSIGNED
literatureReference + INSTANCE LiteratureReference PhysicalEntity   INTEGER(10) UNSIGNED
modified + INSTANCE InstanceEdit DatabaseObject   INTEGER(10) UNSIGNED
name + TEXT N/A PhysicalEntity   TEXT
reviewed + INSTANCE InstanceEdit PhysicalEntity   INTEGER(10) UNSIGNED
revised + INSTANCE InstanceEdit PhysicalEntity   INTEGER(10) UNSIGNED
shortName 1 TEXT N/A PhysicalEntity   TEXT
stableIdentifier 1 INSTANCE StableIdentifier DatabaseObject   INTEGER(10) UNSIGNED
summation + INSTANCE Summation PhysicalEntity   INTEGER(10) UNSIGNED

Referers of class 'PhysicalEntity' instances

Class name Attribute name Cardinality
EntityWithAccessionedSequence inferredTo +
OtherEntity inferredTo +
Complex inferredTo +
Polymer inferredTo +
CandidateSet inferredTo +
GenomeEncodedEntity inferredTo +
DefinedSet inferredTo +
OpenSet inferredTo +
PhysicalEntity inferredTo +
EntitySet inferredTo +
SimpleEntity inferredTo +
ConcurrentEventSet focusEntity +
ReactionlikeEvent input +
Depolymerisation input +
Reaction input +
BlackBoxEvent input +
Polymerisation input +
EntityVertex representedInstance 1
Depolymerisation output +
ReactionlikeEvent output +
Reaction output +
BlackBoxEvent output +
Polymerisation output +
Complex hasComponent +
ComplexDomain hasComponent +
CatalystActivity physicalEntity 1
EntitySet inferredFrom +
PhysicalEntity inferredFrom +
OpenSet inferredFrom +
SimpleEntity inferredFrom +
DefinedSet inferredFrom +
GenomeEncodedEntity inferredFrom +
CandidateSet inferredFrom +
OtherEntity inferredFrom +
Complex inferredFrom +
Polymer inferredFrom +
EntityWithAccessionedSequence inferredFrom +
Complex entityOnOtherCell +
Reaction entityOnOtherCell +
Polymerisation entityOnOtherCell +
BlackBoxEvent entityOnOtherCell +
ReactionlikeEvent entityOnOtherCell +
Depolymerisation entityOnOtherCell +
VertexSearchableTerm termProvider +
Polymer repeatedUnit +
CandidateSet hasCandidate +
PositiveRegulation regulator 1
Regulation regulator 1
NegativeRegulation regulator 1
Requirement regulator 1
DefinedSet hasMember +
EntitySet hasMember +
CandidateSet hasMember +
OpenSet hasMember +
ReactionlikeEvent requiredInputComponent +
Depolymerisation requiredInputComponent +
BlackBoxEvent requiredInputComponent +
Polymerisation requiredInputComponent +
Reaction requiredInputComponent +
CatalystActivity activeUnit +
_Deleted replacementInstances +

Sidebar on the left shows the hierarchy of FlyReactome classes. The number of instances of this class is shown in square brackets and is hyperlinked to a page listing all instances in this class.

The main panel shows attributes of the selected class. Own attributes, i.e. the ones which are not inherited from a parent class are indicated in colour.

'+' in 'Cardinality' column indicates that this is a multi-value attribute.

'Value defines instance' column indicates the attributes the values of which determine instance identity and are used to check if an identical instance has been stored in the database already. 'ALL' indicates that that all of the values of a given attribute must be identical while 'ANY' shows that identity of any single value of a given attribute is enough. Of course, if the identity is defined by multiple attributes each of them has to match.