Attributes of class 'Pathway'

Attribute name Cardinality Value type Allowed classes Attribute origin Value defines instance Db column type
__is_ghost 1 OTHER N/A DatabaseObject   ENUM('TRUE')
_displayName 1 TEXT N/A DatabaseObject   TEXT
_doRelease 1 OTHER N/A Event   ENUM('TRUE','FALSE')
_timestamp 1 OTHER N/A DatabaseObject   TIMESTAMP
authored 1 INSTANCE InstanceEdit Event   INTEGER(10) UNSIGNED
compartment + INSTANCE Compartment Event   INTEGER(10) UNSIGNED
created 1 INSTANCE InstanceEdit DatabaseObject   INTEGER(10) UNSIGNED
crossReference + INSTANCE DatabaseIdentifier Event   INTEGER(10) UNSIGNED
definition 1 TEXT N/A Event   TEXT
doi 1 TEXT N/A Pathway   VARCHAR(64)
edited + INSTANCE InstanceEdit Event   INTEGER(10) UNSIGNED
evidenceType 1 INSTANCE EvidenceType Event   INTEGER(10) UNSIGNED
figure + INSTANCE Figure Event   INTEGER(10) UNSIGNED
goBiologicalProcess 1 INSTANCE GO_BiologicalProcess Event   INTEGER(10) UNSIGNED
hasEvent + INSTANCE Event Pathway ALL INTEGER(10) UNSIGNED
inferredFrom + INSTANCE Event Event   INTEGER(10) UNSIGNED
isCanonical 1 OTHER N/A Pathway   ENUM('TRUE','FALSE')
keywords 1 TEXT N/A Event   TEXT
literatureReference + INSTANCE LiteratureReference Event   INTEGER(10) UNSIGNED
modified + INSTANCE InstanceEdit DatabaseObject   INTEGER(10) UNSIGNED
name + TEXT N/A Event   TEXT
orthologousEvent + INSTANCE Event Event   INTEGER(10) UNSIGNED
precedingEvent + INSTANCE Event Event   INTEGER(10) UNSIGNED
releaseDate 1 OTHER N/A Event   date
reviewed + INSTANCE InstanceEdit Event   INTEGER(10) UNSIGNED
revised + INSTANCE InstanceEdit Event   INTEGER(10) UNSIGNED
species + INSTANCE Species Event   INTEGER(10) UNSIGNED
stableIdentifier 1 INSTANCE StableIdentifier DatabaseObject   INTEGER(10) UNSIGNED
summation + INSTANCE Summation Event   INTEGER(10) UNSIGNED

Referers of class 'Pathway' instances

Class name Attribute name Cardinality
PathwayVertex representedInstance 1
BlackBoxEvent templateEvent 1
PathwayCoordinates locatedEvent 1
ReactionCoordinates locatedEvent 1
ReactionCoordinates locationContext 1
FrontPage frontPageItem +
PathwayDiagram representedPathway 1
Event orthologousEvent +
Reaction orthologousEvent +
Depolymerisation orthologousEvent +
ReactionlikeEvent orthologousEvent +
BlackBoxEvent orthologousEvent +
Polymerisation orthologousEvent +
Pathway orthologousEvent +
_Deleted replacementInstances +
ReactionlikeEvent inferredFrom +
Pathway inferredFrom +
BlackBoxEvent inferredFrom +
Polymerisation inferredFrom +
Event inferredFrom +
Reaction inferredFrom +
Depolymerisation inferredFrom +
ConcurrentEventSet concurrentEvents +
Depolymerisation precedingEvent +
Event precedingEvent +
Reaction precedingEvent +
BlackBoxEvent precedingEvent +
Pathway precedingEvent +
Polymerisation precedingEvent +
ReactionlikeEvent precedingEvent +
PositiveRegulation regulatedEntity 1
Requirement regulatedEntity 1
Regulation regulatedEntity 1
NegativeRegulation regulatedEntity 1
VertexSearchableTerm termProvider +
NegativeRegulation regulator 1
Regulation regulator 1
Requirement regulator 1
PositiveRegulation regulator 1
Pathway hasEvent +
BlackBoxEvent hasEvent +

Sidebar on the left shows the hierarchy of FlyReactome classes. The number of instances of this class is shown in square brackets and is hyperlinked to a page listing all instances in this class.

The main panel shows attributes of the selected class. Own attributes, i.e. the ones which are not inherited from a parent class are indicated in colour.

'+' in 'Cardinality' column indicates that this is a multi-value attribute.

'Value defines instance' column indicates the attributes the values of which determine instance identity and are used to check if an identical instance has been stored in the database already. 'ALL' indicates that that all of the values of a given attribute must be identical while 'ANY' shows that identity of any single value of a given attribute is enough. Of course, if the identity is defined by multiple attributes each of them has to match.