Attributes of class 'GenomeEncodedEntity'

Attribute name Cardinality Value type Allowed classes Attribute origin Value defines instance Db column type
DB_ID 1 INTERNAL_ID N/A DatabaseObject   INTEGER(10) UNSIGNED
__is_ghost 1 OTHER N/A DatabaseObject   ENUM('TRUE')
_displayName 1 TEXT N/A DatabaseObject   TEXT
_timestamp 1 OTHER N/A DatabaseObject   TIMESTAMP
authored 1 INSTANCE InstanceEdit PhysicalEntity   INTEGER(10) UNSIGNED
compartment + INSTANCE EntityCompartment PhysicalEntity ALL INTEGER(10) UNSIGNED
created 1 INSTANCE InstanceEdit DatabaseObject   INTEGER(10) UNSIGNED
crossReference + INSTANCE DatabaseIdentifier PhysicalEntity   INTEGER(10) UNSIGNED
definition 1 TEXT N/A PhysicalEntity   TEXT
edited + INSTANCE InstanceEdit PhysicalEntity   INTEGER(10) UNSIGNED
figure + INSTANCE Figure PhysicalEntity   INTEGER(10) UNSIGNED
goCellularComponent 1 INSTANCE GO_CellularComponent PhysicalEntity   INTEGER(10) UNSIGNED
hasDomain + INSTANCE PhysicalEntity   INTEGER(10) UNSIGNED
inferredFrom + INSTANCE PhysicalEntity PhysicalEntity   INTEGER(10) UNSIGNED
inferredTo + INSTANCE PhysicalEntity PhysicalEntity   INTEGER(10) UNSIGNED
literatureReference + INSTANCE LiteratureReference PhysicalEntity   INTEGER(10) UNSIGNED
modified + INSTANCE InstanceEdit DatabaseObject   INTEGER(10) UNSIGNED
name + TEXT N/A PhysicalEntity ANY TEXT
reviewed + INSTANCE InstanceEdit PhysicalEntity   INTEGER(10) UNSIGNED
revised + INSTANCE InstanceEdit PhysicalEntity   INTEGER(10) UNSIGNED
shortName 1 TEXT N/A PhysicalEntity   TEXT
species 1 INSTANCE Species GenomeEncodedEntity ALL INTEGER(10) UNSIGNED
stableIdentifier 1 INSTANCE StableIdentifier DatabaseObject   INTEGER(10) UNSIGNED
summation + INSTANCE Summation PhysicalEntity   INTEGER(10) UNSIGNED

Referers of class 'GenomeEncodedEntity' instances

Class name Attribute name Cardinality
Complex hasComponent +
ComplexDomain hasComponent +
Complex inferredFrom +
EntitySet inferredFrom +
SimpleEntity inferredFrom +
DefinedSet inferredFrom +
PhysicalEntity inferredFrom +
EntityWithAccessionedSequence inferredFrom +
GenomeEncodedEntity inferredFrom +
OtherEntity inferredFrom +
Polymer inferredFrom +
OpenSet inferredFrom +
CandidateSet inferredFrom +
Polymerisation input +
Reaction input +
BlackBoxEvent input +
Depolymerisation input +
ReactionlikeEvent input +
Requirement regulator 1
NegativeRegulation regulator 1
PositiveRegulation regulator 1
Regulation regulator 1
VertexSearchableTerm termProvider +
ConcurrentEventSet focusEntity +
CatalystActivity activeUnit +
EntityVertex representedInstance 1
Complex entityOnOtherCell +
Polymerisation entityOnOtherCell +
ReactionlikeEvent entityOnOtherCell +
BlackBoxEvent entityOnOtherCell +
Reaction entityOnOtherCell +
Depolymerisation entityOnOtherCell +
Polymer repeatedUnit +
CatalystActivity physicalEntity 1
CandidateSet hasCandidate +
ReactionlikeEvent requiredInputComponent +
BlackBoxEvent requiredInputComponent +
Reaction requiredInputComponent +
Depolymerisation requiredInputComponent +
Polymerisation requiredInputComponent +
DefinedSet hasMember +
OpenSet hasMember +
CandidateSet hasMember +
EntitySet hasMember +
Depolymerisation output +
Reaction output +
BlackBoxEvent output +
ReactionlikeEvent output +
Polymerisation output +
Complex inferredTo +
EntitySet inferredTo +
DefinedSet inferredTo +
SimpleEntity inferredTo +
EntityWithAccessionedSequence inferredTo +
PhysicalEntity inferredTo +
GenomeEncodedEntity inferredTo +
OtherEntity inferredTo +
CandidateSet inferredTo +
Polymer inferredTo +
OpenSet inferredTo +
_Deleted replacementInstances +

Sidebar on the left shows the hierarchy of FlyReactome classes. The number of instances of this class is shown in square brackets and is hyperlinked to a page listing all instances in this class.

The main panel shows attributes of the selected class. Own attributes, i.e. the ones which are not inherited from a parent class are indicated in colour.

'+' in 'Cardinality' column indicates that this is a multi-value attribute.

'Value defines instance' column indicates the attributes the values of which determine instance identity and are used to check if an identical instance has been stored in the database already. 'ALL' indicates that that all of the values of a given attribute must be identical while 'ANY' shows that identity of any single value of a given attribute is enough. Of course, if the identity is defined by multiple attributes each of them has to match.